miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|22431530|gb|BQ997134.1|BQ997134 CGGCCTTATGGCCTGTAGCCGGGGGAATGGTGGTGCTCACGGTAAACGAAACCATGCTCCAACTCGAATTCCAAGCATGG
AATCCACTTGTTGCGGATAAGGTAGTCGATTTCCTTAGACAATGCCTCGTCGGACAATGGTGGTAGGTATGAAAGAGTCT
CGTACTTCTTCAACCCAATTGGTGGCCACACCTTCATGCATTGTACTCTTCCACCGTTGCTGGGTAGGGATGAAAAGTCA
TTGTTAGCCTTCTTGGTAACTGGGAAAGCTACGTTAGACTTGAGGCCGGTGAATGGAGCTGCCAAGCTAGCTTGGGTGGA
GGTGGTGCTGTGCCACCGGCATGTTGCAGTGGGGTTAAGGCAGTCAATAGCGCTGCAAAAACAACCCCTGATCGTCAGAC
GGCTTGTGGTTGTATAAAGAGTGCTTCTGCAAGCATGTCCAACATCAATGCGGGAAACGCTGCTAGCCTCCCCAACAAGT
GTGGTGTTAACATCCCTTTACAGATCAGTCCAAGCACTGATTGCTCCAAGGTGCAGTGAGTCCGAGATGTTTATGCACGT
TTTGGAAGATTTGAAGCATATATATCTAAATTACAAT




Most similar to sp|Q40250|RBS_LACSA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  222 bits (565), Expect = 2e-57
 Identities = 105/115 (91%), Positives = 109/115 (94%)
 Frame = -2

Query: 359 LNPTATCRWHSTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPP 180
           ++ +A    + TTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPP
Sbjct: 4   ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPP 63

Query: 179 IGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGY 15
           IGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGY
Sbjct: 64  IGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGY 118